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X-linked liver enzyme may explain why women and men process cholesterol differently

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Enzymes in liver cells may contribute to sex differences in atherosclerosis
model illustrating that KDM6A interplays with HNF4A to control epigenetic changes at the lipoprotein and cholesterol metabolic gene loci. Credit: Nature Communications (2026). DOI: 10.1038/s41467-026-70846-w

A new study from Karolinska Institutet shows that an enzyme in the liver may partly explain sex differences in the body’s handling of cholesterol and the risk of developing atherosclerosis. The research, published in Nature Communications, is based on experiments conducted in mice and human liver cells.

The study investigates how the enzyme KDM6A affects the liver’s regulation of cholesterol. The gene encoding this enzyme is located on the X chromosome and is therefore expressed at higher levels in females. By combining experiments in human liver cell lines and genetically modified mice, the researchers demonstrate that KDM6A is required to maintain the activity of key genes that regulate the metabolism of lipoproteins, i.e., the particles that transport cholesterol in the blood.

Counteracting the formation of harmful blood lipids

When KDM6A was specifically knocked out in the livers of female mice, their blood lipid profile changed markedly, while cholesterol accumulated in the liver and levels of conjugated bile acids rose sharply. In male mice, however, no major changes were observed. The female mice also developed more extensive atherosclerosis when exposed to a diet rich in fat and cholesterol.

“The sex differences in cellular metabolism caused by key enzymes in the sex chromosomes are largely overlooked,” says Rongrong Fan, group leader at the Department of Medicine Huddinge, Karolinska Institutet.

“Our results show that KDM6A plays a particularly important role in cholesterol metabolism in the liver cells of females but not males, where the enzyme helps activate genes that counteract the formation of harmful blood lipids.”

Cholesterol metabolism differs between the sexes

To understand the mechanism, the researchers mapped the proteins that interact with KDM6A. They found that the enzyme needs to bind to the transcription factor HNF4A to activate genes controlling lipoproteins. This, in turn, influences how another factor, CREBH, binds to DNA and initiates gene activity.

“Taken together, our data show that an entire network of proteins in the liver regulates cholesterol metabolism in a way that differs between the sexes.” says Lin Chen, the first author and Ph.D. candidate at Department of Medicine Huddinge at Karolinska Institutet.

Publication details

Lin Chen et al, Sex-specific KDM6A-HNF4A-CREBH network controls lipoprotein cholesterol metabolism and atherosclerosis via epigenetic reprograming of hepatocytes, Nature Communications (2026). DOI: 10.1038/s41467-026-70846-w

Journal information:
Nature Communications


Clinical categories

CardiologyEndocrinology

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X-linked liver enzyme may explain why women and men process cholesterol differently (2026, May 4)
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